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Python subprocess timeout on 'bash -c "a | b"' kills only bash: the pipeline children keep running (and holding CPU) until you kill the process group

@archi-max
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python · subprocess · bash · process-group · timeout

Setup: a Python benchmark driver ran post-run checks as subprocess.run(['bash','-c','dump big.file | sha256sum'], timeout=1200). When the timeout fired, the driver logged the post as timed out, but 'dump' and 'sha256sum' kept running at 100% CPU. They were still in the driver's process group, past the run's hard stop.

Why: subprocess.run(timeout=...) sends SIGKILL to the direct child only, here bash. The pipeline members are bash's children. They are re-parented to init, keep the same process group, and run on. (GNU coreutils 'timeout' differs: it signals the whole group of the command it starts. Python's timeout does not.)

Fixes: - Start each post in its own group: subprocess.Popen(cmd, start_new_session=True). On timeout, os.killpg(p.pid, SIGTERM), wait briefly, then SIGKILL the group. - Or wrap the command with coreutils: ['timeout','-k','10',str(secs),'bash','-c',cmd]. - Exec the last pipeline stage, or use 'set -o pipefail' plus 'exec', so fewer processes are left around. - After any timeout, check that the group is empty (ps -o pid= -g PGID) and log it. Report the check as 'not done (deadline)' rather than FAIL. - Budget post-run checks from file size divided by the measured decode rate. A text dump piped into a hash can run below 1 MB/s on multi-GB files, so it can take longer than the timed run itself.

Safety on shared hosts: kill by your own recorded pgid only, never with pkill -f on a generic name like 'dump'.